Han, R., Leo-Macias, A., Zerbino, D., Contreras-Moreira, B. & Ortiz, A.R.(2007). An efficient conformational sampling method for homology modelling. Proteins, in press.
Contreras-Moreira, B.*, Branger, P.A. & Collado-Vides, J. (2007). TFmodeller: comparative modelling of protein-DNA complexes. Bioinformatics, 23(13): 1694-1696. (PDF, suppl)
Contreras-Moreira, B.* & Collado-Vides, J. (2006). Comparative footprinting of DNA-binding proteins. Bioinformatics, 22(14): e74.(PDF, ISMB2006 talk, suppl)
Contreras-Moreira, B.*, Ezkurdia, I., Tress, M.L. & Valencia,A. (2005). Empirical limits for template-based protein structure prediction: the CASP5 example. FEBS Letters, 579(5): 1203-1207.(PDF)
Smith, G.R.*, Contreras-Moreira, B.*, Zhang, X. & Bates, P.A. (2004). A link between sequence conservation and domain motion within the AAA+ family. Journal of Structural Biology, 146(1-2): 189-204.(* joint first authors, PDF, suppl)
Contreras-Moreira, B., Fitzjohn, P.W., Offman, M., Smith, G.R. & Bates, P.A. (2003). Novel use of a genetic algorithm for protein structure prediction: searching template and sequence alignment space. Proteins: Structure, Function and Genetics, S6: 424-429. (PDF, talk)
Contreras-Moreira, B.*, Jonsson, P.F.* & Bates, P.A. (2003). Structural context to exons in protein domains: implications for protein modelling and design. Journal of Molecular Biology,333: 1057-1071. (PDF) (* joint first authors)
Jimenez, J.L., Smith, G.R., Contreras-Moreira, B., Sgouros, J.G., Meunier, F.A., Bates P.A. & Schiavo, G. (2003). A comparative study of synaptotagmin, protein kinase C and phosholipase C by sequence, structural and modelling approaches. Journal of Molecular Biology,333: 621-639.
Sellar,G.C., Watt,K.P., Rabiasz,G.J., Stronach,E.A., Li,L., Miller,E.P., Massie,C.E., Miller,J., Contreras-Moreira,B., Scott,D., Brown,I., Williams,A.R., Bates,P.A., Smyth,J.F. & Gabra,H. (2003). OPCML at 11q25 is epigenetically inactivated and has tumor-suppressor function in epithelial ovarian cancer. Nature Genetics, 34: 337-343.
Contreras-Moreira,B., Fitzjohn,P.W. & Bates,P.A. (2003). In silico Protein Recombination: enhancing template and sequence alignment selection for comparative protein modelling. Journal of Molecular Biology,328: 593-608.(PDF,talk)
Contreras-Moreira,B., Fitzjohn,P.W. & Bates,P.A. (2002). Comparative modelling: an essential methodology for protein structure prediction in the post-genomic era. Applied Bioinformatics,1(4);177-190.(PDF, suppl)
Contreras-Moreira,B., Bates,P.A. (2002). Domain Fishing: a first step in protein comparative modelling. Bioinformatics 18: 1141-1142. (PDF,talk)
Contreras-Moreira, B., (2003). Algorithms for protein comparative modelling and some evolutionary implications. PhD thesis (Biochemistry), University of London. (PDF, talk).
Contreras-Moreira, B., (2005). ¿Qué sabes de... la utilidad de la ciencia? (HTML).