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Pfam HMM search results, glocal+local alignments merged (Pfam_ls+Pfam_fs)

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Model Seq-from Seq-to HMM-from HMM-to Score E-value Alignment Description
!! ADH_zinc_N 22421465-25.33.6e-06glocalZinc-binding dehydrogenase

Zinc-binding dehydrogenas




   Alignments of top-scoring domains:

Format for alignment of query to Seed: 
ADH_zinc_N: domain 1 of 1, from 2 to 242: score -25.3, E = 3.6e-06
                   *->gg.epleleevpvpepgpgeVlvkvkaaGiCgsDlhiykgglgliyp
                       g+    l   p+                           g      
       yp086     2    AGpYLRALRILPR---------------------------G----SR 17   

                   gpkdgthlfpvklPlvlGHEgaGvVveVGsgVtgfklavgkfkvGDrVvv
                   +p                             V +                
       yp086    18 EP-----------------------------VQR--------------SW 24   

                   lpivgcCgrgsaeCefCkgsGrenlCpkgratgpgkGlmpndgfggftpk
                   l ++                                              
       yp086    25 LHGYT--------------------------------------------- 29   

                   kdgaPckGkdgyhfmgdGgfaEYvvvparrndyfvvkiPdglddeiplee
                                   dGgfa ++++ a     +++ +P+++    ++ +
       yp086    30 ---------------IDGGFAAHAAAEAG----YAFELPEDA----DPVA 56   

                   aeaAallgcaglTaygalvraakvgslppGdtVlVhGaGGGVGlaAvqlA
                       a+l+cagl ++ +l++a+       G t++++G G+   ++ vq++
       yp086    57 ---TAPLLCAGLIGWQSLKMAGE------GRTIGIYGFGA-AAHILVQVC 96   

                   kaaGAarViavdssedpekklelAkelGAqldadfvnnskglptvnddrk
                   k++G + V+a +    +e+ +++  +lGA     + ++          +k
       yp086    97 KHRGQS-VYAFVLPG-DEAGRKFTLDLGA---VWAGFSG---------EK 132  

                   edfveaikeltgGrngagGvDvvldcsGiglggatldaalallkpgGrlv
                   + +v                D ++  +    +g+ +  al+++++gG++v
       yp086   133 P-PVP--------------LDAAIIFAP---AGELVPMALDVVRKGGTVV 164  

                   lvGpkvavGvpgggaeiplppfdlllkeeeklyersikGsflggrkgrls
                           G+      ip  p  ll +e      r+++ ++  +r+    
       yp086   165 CG------GIDM--SDIPSMPYRLLWGE------RRVVSVANLTRS---- 196  

                   vlspdtspdelrealdllasgikdkngkgvldplith.tlppledsleea
                               + +++++ g        +++ +   ++++ple     a
       yp086   197 ------------DGAEFFSIG--------KAAGVRCFtSVYPLE----HA 222  

                   neAfellesgkhtgkvvlip<-*
                   neA+++l++g+++g  v++p   
       yp086   223 NEALDDLRAGRVSGAAVIVP    242

   NEW! Phylogenomic analysis of query using RIO.

Given a query sequence, Pfam domain, and species, the RIO server will order sequences in the Pfam domain by orthology to the query. Many other options are available, and an annotated gene tree can be generated and viewed with ATV. The button below will send your query and Pfam domain hits to the RIO server.
   


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