NCBI Conserved Domain Search
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RPS-BLAST 2.2.9 [May-01-2004] Query= local sequence: yp086 (242 letters) Database: cdd.v2.01
gnl|CDD|25397 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenasegnl|CDD|10789 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]gnl|CDD|10787 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]gnl|CDD|10788 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]gnl|CDD|10474 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
 Domain Relatives
    .. This CD alignment includes 3D structure. To display structure, download Cn3D!
  PSSMs producing significant alignments: Score
(bits)
E
value
 
gnl|CDD|25397 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase 62.4 4e-11
  gnl|CDD|10789 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General fu... 134 9e-33
  gnl|CDD|10787 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III ... 46.3 3e-06
  gnl|CDD|10788 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent... 39.6 3e-04
gnl|CDD|10474 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent... 37.3 0.002


gnl|CDD|25397, pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.
             CD-Length = 341 residues, only  62.8% aligned
             Score = 62.4 bits (151), Expect = 4e-11
Query:  48   LPEDADPVATAPLLCAGLIGWQSLKMAGE--GRTIGIYGFGAAAHILVQVCKHRGQSVYA  105
Sbjct:  128  IPDGLPLEEAAALGCAGLTAYGALVRAAKVPGDTVLVHGAGGVGLAAIQLAKAAGAAR-V  186

Query:  106  FVLPGDEAGRKFTLDLGAVWAGFSGEKPPVPLDAA----------IIFAPAGELVPMALD  155
Sbjct:  187  IAVDSSEKKLELAKELGAADFVNNSRKEDFVEAIKELTGGKGVDVVLDCVGGATLDAALA  246

Query:  156  VVRKGGTVVCGGI--DMSDIPSMPYRLLWGERRVVSVANLTRSDG------AEFFSIGKA  207
Sbjct:  247  LLKPGGRLVVVGVPGGGAPIPLDPFPLLLKERSIKGSFLGGRKPDELREALDLLASGKGV  306

Query:  208  AGVRCFTSVYPLEHANEALDDLRAGRVSGAAVIVP  242
Sbjct:  307  LKPLITHTLPPLDEAPEAFELMESGKHTGKVVVIP  341


gnl|CDD|10789, COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]
             CD-Length = 339 residues, only  65.8% aligned
             Score =  134 bits (339), Expect = 9e-33
Query:  27   GYTIDGGFAAHAAAEAGYAFELPEDADPVATAPLLCAGLIGWQSLKMA--GEGRTIGIYG  84
Sbjct:  115  GYTTDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRALKKANVKPGKWVAVVG  174

Query:  85   FGAAAHILVQVCKHRGQSVYAFVLPGD--EAGRKFTLDLGAVWAG-FSGEKPPVPLDAAI  141
Sbjct:  175  AGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAII  234

Query:  142  IFAPAGELVPMALDVVRKGGTVVCGGI-DMSDIPSMPY-RLLWGERRVVSVANLTRSDGA  199
Sbjct:  235  DTVG-PATLEPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGTRADLE  293

Query:  200  EFFSIGKAAGVRC-FTSVYPLEHANEALDDLRAGRVSGAAVIVP  242
Sbjct:  294  EALDFAAEGKIKPEILETIPLDEINEAYERMEKGKVRGRAVIDM  337


gnl|CDD|10787, COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
             CD-Length = 366 residues, only  56.0% aligned
             Score = 46.3 bits (110), Expect = 3e-06
Query:  49   PEDADPVATAPLLCAGLIGWQSLKMAG---EGRTIGIYGFGAAAHILVQVCKHRGQSVYA  105
Sbjct:  155  DPDAPLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAG-RI  213

Query:  106  FVLPGDEAGRKFTLDLGAVWAGFSGEKPPVPL----------DAAIIFAPAGELVPMALD  155
Sbjct:  214  IAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFECVGNVEVMRQALE  273

Query:  156  VVRKGGTVVCGGI-DMSDIPSMPYRLLWGERRVVSVA---NLTRSDGAEFFSI---GKAA  208
Sbjct:  274  ATHRGGTSVIIGVAGAGQEISTRPFQLVTGRVWKGSAFGGARPRSDIPRLVDLYMAGKLP  333

Query:  209  GVRCFTSVYPLEHANEALDDLRAGRV  234
Sbjct:  334  LDRLVTHTIPLEDINEAFDLMHEGKS  359


gnl|CDD|10788, COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
             CD-Length = 350 residues, only  60.3% aligned
             Score = 39.6 bits (92), Expect = 3e-04
Query:  48   LPEDADP--VATAPLLCAGLIGWQSLKMAGEGRTIGIYGFGAAAHILVQVCKHRGQSVYA  105
Sbjct:  138  LPDGIDEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVV-  196

Query:  106  FVLPGDEAGRKFTLDLGAVWAGFSGEKPPVPL-----------DAAIIFAPAGELVPMAL  154
Sbjct:  197  IVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPPALDQAL  256

Query:  155  DVVRKGGTVVCGGIDMSDIPSMPYRLLWGERRVV--SVANLTRSD---GAEFFSIGKAAG  209
Sbjct:  257  EALRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLRPSGREDFERALDLLASGKIDP  316

Query:  210  VRCFTSVYPLEHANEALDDLRAGRVSGAAVIV  241
Sbjct:  317  EKLITHRLPLDDAAEAYELFADRKEEAIKVVL  348


gnl|CDD|10474, COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
             CD-Length = 326 residues, only  66.3% aligned
             Score = 37.3 bits (86), Expect = 0.002
Query:  48   LPEDADPVATAPLLCAGLIGWQSLKMAGE---GRTIGIYGF-GAAAHILVQVCKHRGQSV  103
Sbjct:  111  LPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATV  170

Query:  104  YAFVLPGDEAGRKFTLDLGA--------------VWAGFSGEKPPVPLDAAIIFAPAGEL  149
Sbjct:  171  VAVV--SSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTV-----GGDT  223

Query:  150  VPMALDVVRKGGTVV-CGGIDMSDIPSMPYRLLWGERRVVSVANLTRSDG----------  198
Sbjct:  224  FAASLAALAPGGRLVSIGALSGGPPVPLNLLPLLGKRLTLRGVTLGSRDPEALAEALAEL  283

Query:  199  AEFFSIGKAAGVRCFTSVYPLEHANEALDDLRA-GRVSGAAVIVP  242
Sbjct:  284  FDLLASGKLKPVI--DRVYPLAEAPAAAAHLLLERRTTGKVVLKV  326

Citing CD-Search: Marchler-Bauer A, Anderson JB, DeWeese-Scott C, Fedorova ND, Geer LY, He S, Hurwitz DI, Jackson JD, Jacobs AR, Lanczycki CJ, Liebert CA, Liu C, Madej T, Marchler GH, Mazumder R, Nikolskaya AN, Panchenko AR, Rao BS, Shoemaker BA, Simonyan V, Song JS, Thiessen PA, Vasudevan S, Wang Y, Yamashita RA, Yin JJ, and Bryant SH (2003), "CDD: a curated Entrez database of conserved domain alignments", Nucleic Acids Res. 31:383-387.